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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20680730_20681491_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20680730 - 20681491
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTTCCACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTGTCTTCCACT
Flanking Amino Acid:
ISVMEEELKRSMELFTVNKN
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
69.1
37.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
76.4
0.59
0.8
71.1
28.4
Minor 5ss
35.2
-1.7
3.2
41.6
38.8
Minor BPS
57.6
0.32
2
79.76
42.7

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234