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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20681580_20682065_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20681580 - 20682065
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
ATCTTTACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATTATTAATC
Flanking Amino Acid:
NGVYISLENFEALNGKLTVQ
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
68.1
42.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.2
0.7
0.8
78.6
34
Minor 5ss
47.5
-0.2
2.8
63.9
41.5
Minor BPS
67.9
0.54
1.5
76.1
33.7

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234