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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20682155_20682858_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20682155 - 20682858
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATTTCTTCATG
Flanking Amino Acid:
QKLTKKALIKEYTEEIERLK
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
38.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.6
0.8
0.8
81.6
29.2
Minor 5ss
43.2
-0.7
2.9
55
49.2
Minor BPS
60.9
0.2
1.8
67.77
40.4

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234