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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20682955_20683059_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20682955 - 20683059
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCAGCTTGACC
Flanking Amino Acid:
TVSPASINLEETLSTLEYAH
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.1
0.63
0.9
72.8
35.9
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
58.8
0.26
1.9
70.46
41.4

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234