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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20683303_20683568_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20683303 - 20683568
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TTTCTCTTATCT
Flanking Amino Acid:
ELVKIGKLNLVDLAGSENIG
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
87.3
0.84
0.7
84.9
29.6
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
72.3
0.78
1.5
89.15
35.3

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234