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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20683660_20684221_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20683660 - 20684221
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTAATC
5'SS Class:
major
3'SS Sequence:
AATTCTTTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTGTCTGAAAT
Flanking Amino Acid:
TAATYMNAYSSRSHSVFSIT
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
73.5
35.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.1
0.65
0.8
73.4
36.2
Minor 5ss
44.2
-0.6
2.8
61
43.5
Minor BPS
56.2
0.27
1.7
73.47
43.3

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234