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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20684347_20684432_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20684347 - 20684432
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTTTTCTGACA
Flanking Amino Acid:
LQMFDDPRNKRGVIIKGLEE
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
80
0.75
1
78.6
31
Major PPT
82.6
0.73
0.9
79.9
32.3
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
57.4
0.23
1.6
70.06
36.4

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234