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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20684619_20684974_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20684619 - 20684974
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCAATCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GCATTTTCAATC
Flanking Amino Acid:
SPNEEYTWEEDPLAGIIPRT
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.5
0.6
0.8
71
34.5
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
50.3
-0
1.5
55.32
37.4

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234