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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20685231_20685361_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20685231 - 20685361
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTACT
5'SS Class:
major
3'SS Sequence:
TTTGCTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAA
U12 Branch Point Sequence:
TTTGCTCCAACA
Flanking Amino Acid:
TSRKTYTFDMVFGAQAKQID
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
77.1
37.8
Major BPS
60.1
0.25
1.3
61.7
43.1
Major PPT
75.3
0.57
0.9
70.6
35
Minor 5ss
44.1
-0.6
2.6
58.3
40.2
Minor BPS
52.4
0.07
2
72.2
40

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234