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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20694836_20704831_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20694836 - 20704831
Intron Length:
9996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACGGTGT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTTTTTATTT
Flanking Amino Acid:
ASQSRRRSFLGLQKETKNKM
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
61.5
45.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.4
0.73
1
87.4
29.7
Minor 5ss
36.9
-1.5
3.5
46.9
48.5
Minor BPS
60.9
0.42
1.5
74.66
36.6

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033321
20694729 - 20757310
62582
ENSAPLT00000025747
20694729 - 20793528
98800
ENSAPLT00000021894
20694729 - 20802810
108082
ENSAPLT00000042444
20694729 - 20776497
81769
ENSAPLT00000005016
20694729 - 20757033
62305
ENSAPLT00000035426
20694729 - 20802810
108082