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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20705017_20706389_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20705017 - 20706389
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
TTTCCTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAT
U12 Branch Point Sequence:
TTTTCCTGAATG
Flanking Amino Acid:
KSSAALDVHIGSLSDPPNIA
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
66.8
0.42
1.4
75.9
36.3
Major PPT
82.4
0.73
0.7
78.1
23.8
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
77.2
0.72
1.4
80.5
35.2

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025747
20694729 - 20793528
98800
ENSAPLT00000021894
20694729 - 20802810
108082
ENSAPLT00000042444
20694729 - 20776497
81769
ENSAPLT00000005016
20694729 - 20757033
62305
ENSAPLT00000035426
20694729 - 20802810
108082
ENSAPLT00000033321
20694729 - 20757310
62582