About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20706598_20707486_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20706598 - 20707486
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TTGACTTGAATT
Flanking Amino Acid:
SHEHLEGALDRFAQFFLCPL
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74
36.5
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
78.9
0.65
0.9
78.2
35.7
Minor 5ss
39
-1.2
2.9
49.8
46.2
Minor BPS
63.3
0.5
1.5
77.41
39.4

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033321
20694729 - 20757310
62582
ENSAPLT00000025747
20694729 - 20793528
98800
ENSAPLT00000021894
20694729 - 20802810
108082
ENSAPLT00000042444
20694729 - 20776497
81769
ENSAPLT00000005016
20694729 - 20757033
62305
ENSAPLT00000035426
20694729 - 20802810
108082