Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20717424_20718186_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20717424 - 20718186

Intron Length:

763

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGTGA

5'SS Class:

major

3'SS Sequence:

AACTGTTTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CCTTCTTAAACT

Flanking Amino Acid:

PQEWVFQECKDLNAVAFRFK

Intron Amino Acid Position:

419

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

60.1

41.3

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

66.7

0.38

0.9

58.1

42.3

Minor 5ss

34.4

-1.8

3.5

47.2

48.2

Minor BPS

66.1

0.58

1.7

78.9

Associated Gene:

Gene:

IDE

Ensembl Gene ID:

ENSAPLG00000004758

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021894

20694729 - 20802810

108082

ENSAPLT00000042444

20694729 - 20776497

81769

ENSAPLT00000005016

20694729 - 20757033

62305

ENSAPLT00000035426

20694729 - 20802810

108082

ENSAPLT00000033321

20694729 - 20757310

62582

ENSAPLT00000025747

20694729 - 20793528

98800