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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20718268_20721770_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20718268 - 20721770
Intron Length:
3503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTTACA
Flanking Amino Acid:
YTSKLGGMLHYYPIEEVLAA
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
81.3
0.7
0.8
73.6
37
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
59.6
0.3
1.9
72.55
38.8

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025747
20694729 - 20793528
98800
ENSAPLT00000021894
20694729 - 20802810
108082
ENSAPLT00000042444
20694729 - 20776497
81769
ENSAPLT00000005016
20694729 - 20757033
62305
ENSAPLT00000035426
20694729 - 20802810
108082
ENSAPLT00000033321
20694729 - 20757310
62582