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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20729275_20731414_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20729275 - 20731414
Intron Length:
2140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTTTTCTTGACA
Flanking Amino Acid:
DATQYPALVKDTAMSKLWFK
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
76.8
0.6
0.9
72.5
36.8
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
78.3
0.89
1.1
81.71
33.5

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035426
20694729 - 20802810
108082
ENSAPLT00000005016
20694729 - 20757033
62305
ENSAPLT00000033321
20694729 - 20757310
62582
ENSAPLT00000025747
20694729 - 20793528
98800
ENSAPLT00000042444
20694729 - 20776497
81769
ENSAPLT00000021894
20694729 - 20802810
108082