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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20731498_20735781_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20731498 - 20735781
Intron Length:
4284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTACTTTCAACA
Flanking Amino Acid:
PKACLNFEFFSPFAYVDPLH
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.4
0.71
0.8
72.8
37.1
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
59.5
0.29
1.5
69.67
36.3

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035426
20694729 - 20802810
108082
ENSAPLT00000033321
20694729 - 20757310
62582
ENSAPLT00000025747
20694729 - 20793528
98800
ENSAPLT00000005016
20694729 - 20757033
62305
ENSAPLT00000042444
20694729 - 20776497
81769