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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20731498_20736473_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20731498 - 20736473
Intron Length:
4976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCAAA
U12 Branch Point Sequence:
GGTATCAAAGCA
Flanking Amino Acid:
PKACLNFEFFSRYIYADPLH
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
59.9
0.25
1.2
69
34.4
Major PPT
81.9
0.72
0.9
84.5
30.4
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
40.5
-0.7
2
50.49
40.3

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021894
20694729 - 20802810
108082