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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20735927_20740260_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20735927 - 20740260
Intron Length:
4334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TCTTCTGTACTT
Flanking Amino Acid:
DLQNTIYGMYLSVKGYNDKQ
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
77.4
0.62
0.8
73
31.3
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
49.9
0.07
2.2
74.65
43.4

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033321
20694729 - 20757310
62582
ENSAPLT00000025747
20694729 - 20793528
98800
ENSAPLT00000042444
20694729 - 20776497
81769
ENSAPLT00000035426
20694729 - 20802810
108082