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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20735927_20741996_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20735927 - 20741996
Intron Length:
6070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATAATTTGAACT
Flanking Amino Acid:
DLQNTIYGMYYMRSLNNFRA
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.7
0.69
0.9
77.7
40.7
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
58.1
0.33
1.4
72.71
37.7

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005016
20694729 - 20757033
62305