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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20736619_20740260_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20736619 - 20740260
Intron Length:
3642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
ACTTTTTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TCTTCTGTACTT
Flanking Amino Acid:
GIASGMNAILLSVKGYNDKQ
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
72.7
38.2
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
77.4
0.62
0.8
73
31.3
Minor 5ss
37.6
-1.4
2.8
48.4
41.7
Minor BPS
49.9
0.07
2.2
74.65
43.4

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021894
20694729 - 20802810
108082