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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20740372_20741996_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20740372 - 20741996
Intron Length:
1625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATAATTTGAACT
Flanking Amino Acid:
EKRFEIIKEAYMRSLNNFRA
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
75.3
37.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.7
0.69
0.9
77.7
40.7
Minor 5ss
46
-0.4
2.9
65.3
45.9
Minor BPS
58.1
0.33
1.4
72.71
37.7

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035426
20694729 - 20802810
108082
ENSAPLT00000033321
20694729 - 20757310
62582
ENSAPLT00000025747
20694729 - 20793528
98800
ENSAPLT00000021894
20694729 - 20802810
108082
ENSAPLT00000042444
20694729 - 20776497
81769