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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20746224_20747248_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20746224 - 20747248
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACTGTTTTAACT
Flanking Amino Acid:
VRYREVQLPDRGWFVYQQRN
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.1
0.74
0.7
81.2
30.8
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
67.6
0.63
1.4
77.06
40.2

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021894
20694729 - 20802810
108082
ENSAPLT00000042444
20694729 - 20776497
81769
ENSAPLT00000005016
20694729 - 20757033
62305
ENSAPLT00000035426
20694729 - 20802810
108082
ENSAPLT00000033321
20694729 - 20757310
62582
ENSAPLT00000025747
20694729 - 20793528
98800