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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20750402_20752792_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20750402 - 20752792
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTACTCTAATT
Flanking Amino Acid:
IISQQYNFDRDNIEVAYLKT
Intron Amino Acid Position:
887

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.2
0.63
1
73.2
41.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
59.3
0.37
1.7
77.06
39.9

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025747
20694729 - 20793528
98800
ENSAPLT00000021894
20694729 - 20802810
108082
ENSAPLT00000042444
20694729 - 20776497
81769
ENSAPLT00000005016
20694729 - 20757033
62305
ENSAPLT00000035426
20694729 - 20802810
108082
ENSAPLT00000033321
20694729 - 20757310
62582