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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20755774_20776461_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20755774 - 20776461
Intron Length:
20688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TATTTTTTTACA
Flanking Amino Acid:
NLAPAPPLPQRIQIEQPAKQ
Intron Amino Acid Position:
992

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
92.5
0.96
0.7
87.8
29.2
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
65.9
0.49
1.6
75.62
35.9

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042444
20694729 - 20776497
81769