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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20755774_20793438_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20755774 - 20793438
Intron Length:
37665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
ACATTTGTAACT
Flanking Amino Acid:
NLAPAPPLPQELYNRATYGC
Intron Amino Acid Position:
992

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
89.1
0.88
0.7
88.2
29.1
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
52.5
0.16
2
70.07
41.4

Associated Gene:

Gene:
IDE
Ensembl Gene ID:
ENSAPLG00000004758
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025747
20694729 - 20793528
98800