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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20791776_20807587_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20791776 - 20807587
Intron Length:
15812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTCCTTTAATT
Flanking Amino Acid:
PGLALQQTMDRSCWVCFATD
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81.1
0.7
0.8
78
34
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
76.1
0.9
1.2
84.98
35.9

Associated Gene:

Gene:
MARCHF5
Ensembl Gene ID:
ENSAPLG00000005697
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005889
20781201 - 20807631
26431