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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20866960_20868861_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20866960 - 20868861
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTGA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
GGTGCCTCATTT
Flanking Amino Acid:
VGGLPPDIDEDEITASFRRF
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.6
41.8
Major BPS
74.1
0.6
1
69
38.9
Major PPT
87.8
0.85
0.7
84.9
29.9
Minor 5ss
35.1
-1.7
3.4
47.8
47.7
Minor BPS
48.2
-0
1.9
65.79
44.8

Associated Gene:

Gene:
CPEB3
Ensembl Gene ID:
ENSAPLG00000014437
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015035
20814037 - 20895664
81628
ENSAPLT00000042381
20811993 - 20895664
83672
ENSAPLT00000017266
20814037 - 20895664
81628