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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20887880_20889106_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20887880 - 20889106
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
ATGCTCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
AATTCCTTTACT
Flanking Amino Acid:
VSSPTIKDKPVQIRPWNLSD
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
79.4
0.66
0.9
72.8
36.9
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
76.4
0.91
1.5
87.87
37

Associated Gene:

Gene:
CPEB3
Ensembl Gene ID:
ENSAPLG00000014437
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042381
20811993 - 20895664
83672
ENSAPLT00000017266
20814037 - 20895664
81628
ENSAPLT00000015035
20814037 - 20895664
81628