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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20889222_20892340_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20889222 - 20892340
Intron Length:
3119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TGTCTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAATATTTAAAA
Flanking Amino Acid:
VGGVPRPLRAVELAMIMDRL
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69.4
36.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.2
0.81
0.8
80.9
31.1
Minor 5ss
34.4
-1.8
2.8
37.9
40.9
Minor BPS
59.9
0.31
1.6
68.13
37.3

Associated Gene:

Gene:
CPEB3
Ensembl Gene ID:
ENSAPLG00000014437
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042381
20811993 - 20895664
83672
ENSAPLT00000017266
20814037 - 20895664
81628
ENSAPLT00000015035
20814037 - 20895664
81628