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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20892523_20895436_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20892523 - 20895436
Intron Length:
2914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAATG
Flanking Amino Acid:
QLQHNDIDKRVEVKPYVLDD
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.6
0.67
0.9
74.7
33.8
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
57.7
0.1
1.6
62.38
40.7

Associated Gene:

Gene:
CPEB3
Ensembl Gene ID:
ENSAPLG00000014437
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042381
20811993 - 20895664
83672
ENSAPLT00000017266
20814037 - 20895664
81628
ENSAPLT00000015035
20814037 - 20895664
81628