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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20925437_20925733_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20925437 - 20925733
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTTTTTGAAG
Flanking Amino Acid:
QLLDLFTLDKDGKTEKADTS
Intron Amino Acid Position:
1832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
87.5
0.84
0.9
90.6
22.1
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
64.4
0.31
1.5
70.73
36.5

Associated Gene:

Gene:
BTAF1
Ensembl Gene ID:
ENSAPLG00000006110
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041326
20925290 - 20969442
44153
ENSAPLT00000006373
20925290 - 20975196
49907