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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20925905_20926208_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20925905 - 20926208
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATTTTTTTACCT
Flanking Amino Acid:
AMDRAHRIGQKRVVNVYRLI
Intron Amino Acid Position:
1775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
74.7
35.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.8
0.85
0.6
85.2
22.2
Minor 5ss
39
-1.2
3
51.2
45.7
Minor BPS
69.7
0.7
1.5
85.39
35.1

Associated Gene:

Gene:
BTAF1
Ensembl Gene ID:
ENSAPLG00000006110
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041326
20925290 - 20969442
44153
ENSAPLT00000006373
20925290 - 20975196
49907