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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20927815_20928425_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20927815 - 20928425
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CATACCTTAATT
Flanking Amino Acid:
HAPKLSALKQLLLDCGLGNG
Intron Amino Acid Position:
1651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.3
0.57
1
75.4
32.4
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
75.2
0.87
1.3
82
39.5

Associated Gene:

Gene:
BTAF1
Ensembl Gene ID:
ENSAPLG00000006110
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041326
20925290 - 20969442
44153
ENSAPLT00000006373
20925290 - 20975196
49907