Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20928579_20928930_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

20928579 - 20928930

Intron Length:

352

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACATTTT

5'SS Class:

strong_major

3'SS Sequence:

TTAATAATCAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

ATTCCTTTAATA

Flanking Amino Acid:

KLKATGHVFQALQYLRKLCN

Intron Amino Acid Position:

1600

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

81.4

33.4

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

58.2

0.19

1.1

57.4

41.2

Minor 5ss

44.4

-0.6

3.2

44.3

Minor BPS

0.81

1.1

79.18

30.3

Associated Gene:

Gene:

BTAF1

Ensembl Gene ID:

ENSAPLG00000006110

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041326

20925290 - 20969442

44153

ENSAPLT00000006373

20925290 - 20975196

49907