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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20929602_20929760_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20929602 - 20929760
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
GTTTCCTTCACT
Flanking Amino Acid:
ARSSSREQEAGVLAMEALHR
Intron Amino Acid Position:
1514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
73.9
0.54
0.8
73.8
30.1
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
78.7
0.99
1.7
92.9
35.6

Associated Gene:

Gene:
BTAF1
Ensembl Gene ID:
ENSAPLG00000006110
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041326
20925290 - 20969442
44153
ENSAPLT00000006373
20925290 - 20975196
49907