Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20931125_20931367_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20931125 - 20931367

Intron Length:

243

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTTA

5'SS Class:

strong_major

3'SS Sequence:

GATATTCTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ATATTCTTAAAG

Flanking Amino Acid:

ICILAGDHCLRAQEYARTKL

Intron Amino Acid Position:

1341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.8

84.1

30.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

65.4

0.35

1.1

63.9

41.6

Minor 5ss

47.4

-0.3

2.8

64.4

Minor BPS

67.6

0.42

1.4

67.9

39.2

Associated Gene:

Gene:

BTAF1

Ensembl Gene ID:

ENSAPLG00000006110

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041326

20925290 - 20969442

44153

ENSAPLT00000006373

20925290 - 20975196

49907