Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20935789_20935879_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20935789 - 20935879

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAACTATA

5'SS Class:

major

3'SS Sequence:

TGTTTTTTAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TGTTTTTTAACA

Flanking Amino Acid:

LRNNIHINNFDRKSLLEKGD

Intron Amino Acid Position:

1096

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

79.8

35.3

Major BPS

84.4

0.85

34.5

Major PPT

84.1

0.77

0.9

35.4

Minor 5ss

-0.5

2.6

56.8

42.7

Minor BPS

80.4

0.95

83.49

30.3

Associated Gene:

Gene:

BTAF1

Ensembl Gene ID:

ENSAPLG00000006110

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041326

20925290 - 20969442

44153

ENSAPLT00000006373

20925290 - 20975196

49907