About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20942094_20942733_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20942094 - 20942733
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACGTTAAAC
Flanking Amino Acid:
MLLEVKTRSKEKAGTKLRQG
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
86.9
0.83
0.7
81.8
30.1
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
59.5
0.28
2.2
76.65
39.1

Associated Gene:

Gene:
BTAF1
Ensembl Gene ID:
ENSAPLG00000006110
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006373
20925290 - 20975196
49907
ENSAPLT00000041326
20925290 - 20969442
44153