Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20944879_20945010_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20944879 - 20945010

Intron Length:

132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGACTGAG

5'SS Class:

major

3'SS Sequence:

CATACTTGCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

TTTTTGTAAACT

Flanking Amino Acid:

ESLVHLQSQKVPFILNTLWD

Intron Amino Acid Position:

498

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.64

1.1

68.4

38.7

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

61.7

0.26

Minor 5ss

32.1

-2

3.1

39.6

46.4

Minor BPS

59.7

0.38

2.3

86.99

39.2

Associated Gene:

Gene:

BTAF1

Ensembl Gene ID:

ENSAPLG00000006110

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041326

20925290 - 20969442

44153

ENSAPLT00000006373

20925290 - 20975196

49907