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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20958733_20970787_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20958733 - 20970787
Intron Length:
12055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GTCAATCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
AATAGCTTAACT
Flanking Amino Acid:
TNIFPALIFIRLDRLFILLD
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
62.8
0.29
1
59.2
41.7
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
65.9
0.58
1.8
80.76
40.4

Associated Gene:

Gene:
BTAF1
Ensembl Gene ID:
ENSAPLG00000006110
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006373
20925290 - 20975196
49907