About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20970883_20975172_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20970883 - 20975172
Intron Length:
4290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAAG
5'SS Class:
major
3'SS Sequence:
CTGTCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TATCAAATAAAT
Flanking Amino Acid:
MGPVTRKQIISLGLQFII
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.6
41.7
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
78.3
0.64
0.9
72.5
37.6
Minor 5ss
24.8
-2.9
3.1
29.2
43.7
Minor BPS
45
-0.3
2
68.28
40.9

Associated Gene:

Gene:
BTAF1
Ensembl Gene ID:
ENSAPLG00000006110
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006373
20925290 - 20975196
49907