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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20980801_20981252_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20980801 - 20981252
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
AAAGACTTAATT
Flanking Amino Acid:
SDNDDFNRSYSNRTNCPEDN
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
82.3
0.73
0.8
75.8
32.8
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
58.1
0.33
1.6
69.72
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028282
20980491 - 21029627
49137