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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20983110_20983705_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20983110 - 20983705
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAATAGGC
5'SS Class:
major
3'SS Sequence:
AAATTCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTCTATTTAAGA
Flanking Amino Acid:
VERFPNEDFQGSGKRLRAYD
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
57.1
40.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
76.8
0.6
0.9
69.6
40.6
Minor 5ss
30.4
-2.2
3.3
33.5
41.9
Minor BPS
60
0.31
1.8
71.69
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028282
20980491 - 21029627
49137