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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20983808_20984769_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20983808 - 20984769
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTTTTTATTC
Flanking Amino Acid:
LTDLRTQPMRSNLGMDVWDS
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.1
37.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.9
0.67
0.8
73.8
36.6
Minor 5ss
41.8
-0.9
3.2
54.8
49.4
Minor BPS
53.6
0.09
1.6
60.6
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028282
20980491 - 21029627
49137