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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20984846_20985312_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20984846 - 20985312
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCATTAGACT
Flanking Amino Acid:
EGWDPEAAIQAFGDARGHRI
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.9
38.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
40.7
-1
2.8
52.9
44.2
Minor BPS
52.2
0.15
1.9
77.51
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028282
20980491 - 21029627
49137