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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20985360_20985462_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20985360 - 20985462
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
AATGATCTAACC
Flanking Amino Acid:
GINRTGYLICRYLIDVEGWD
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
47.5
-0.2
1.9
59.74
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028282
20980491 - 21029627
49137