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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20985524_20987133_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20985524 - 20987133
Intron Length:
1610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATATC
5'SS Class:
major
3'SS Sequence:
TCCATTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCCATTTTGACA
Flanking Amino Acid:
RKFLWENAGNEKLIGVHCTN
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.9
35.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.7
0.56
1
71.3
38.4
Minor 5ss
40.1
-1.1
2.9
55.1
42.4
Minor BPS
57.1
0.22
1.3
61.7
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028282
20980491 - 21029627
49137