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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20987258_20988110_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20987258 - 20988110
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAATAATG
Flanking Amino Acid:
TYTTRYYEVKDLPKSVQYKK
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.8
0.63
1
73.5
41.9
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
56.5
0.07
1.9
68.34
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028282
20980491 - 21029627
49137