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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21023607_21025267_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21023607 - 21025267
Intron Length:
1661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
TGCTCTATCACA
Flanking Amino Acid:
VSVSYNRSYQERGPYHNVQN
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
70.9
35
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
74.8
0.56
0.9
68.8
35.9
Minor 5ss
26
-2.8
3
31.8
42.6
Minor BPS
49.2
-0
2
64.6
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006701
21023535 - 21031472
7938