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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_21026768_21026858_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21026768 - 21026858
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CTTCCCTTCATT
Flanking Amino Acid:
ADYFLEVSLQDHAFLNYAPS
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
75.7
0.58
0.8
73.5
29.9
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
65.2
0.56
1.8
81.08
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006466
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006701
21023535 - 21031472
7938